Peer-Reviewed Publications
(* indicates undergraduate student; + indicates high school student)
2022
67. Kutos, S., E.M. Barnes, J.D. Lewis. 2022. Soil fungal communities vary more with soil characteristics than tree diversity at a local scale. Canadian Journal of Forest Research doi: 10.1139/cjfr-2021-0360
66. Butcher, C.L., B.Y. Rubin, S.L. Anderson, J.D. Lewis. 2022. Long-distance pollen dispersal in urban green roof and ground-level habitats. Frontiers in Ecology and Evolution 10:790464. doi: 10.3389/fevo.2022.790464
65. Kutos, S., E.M. Barnes, A. Bhutada*, J.D. Lewis. 2022. Preferential associations of soil fungal taxa under mixed compositions of eastern American tree species. FEMS Microbiology Ecology 98(6). doi: 10.1093/femsec/fiac056
64. Aloisio, J.M., S.-J. Roberts, R. Becker-Klein, S. Dunifon, J.D. Lewis, J.A. Clark, J. Munshi-South, K. Tingley. 2022. Impacts of a near-peer urban ecology research mentoring program on undergraduate mentors. Frontiers in Ecology and Evolution 10:803210. doi: 10.3389/fevo.2022.803210
2021
63. Beauchamp, A.L., S.-J. Roberts, J.M. Aloisio, D. Wasserman, J.E. Heimlich, J.D. Lewis, J. Munshi-South, J.A. Clark, K. Tingley. 2021. Effects of research and mentoring on underrepresented youths’ STEM persistence into college. Journal of Experiential Education 45(3): 316-336. doi: 10.1177/10538259211050098
62. Barnes, E.M., S. Kutos, N. Naghshineh, M. Mesko*, Q. You*, J.D. Lewis. 2021. Assembly of the amphibian microbiome is influenced by the effects of land-use change on environmental reservoirs. Environmental Microbiology 23(8):4595-4611. doi: 10.1111/1462-2920.15653
2020
61. Aloisio, J.M., M.I. Palmer, A.R. Tuininga and J.D. Lewis. 2020. Introduced and native species colonise vacant unmanaged green roofs in New York City. Urban Ecosystems doi: 10.1007/s11252-020-00992-6
60. Barnes, E., E.L. Carter and J.D. Lewis. 2020. Predicting microbiome function across space is confounded by strain-level differences and functional redundancy across taxa. Frontiers in Microbiology 11:101. doi: 10.3389/fmicb.2020.00101
59. Butcher, C.L., B.Y. Rubin, S.L. Anderson and J.D. Lewis. (accepted) Pollen dispersal patterns differ among sites for a wind-pollinated species and an insect-pollinated species. American Journal of Botany
58. Butcher, C.L., B.Y. Rubin, S.L. Anderson, V.K. Nandula, M.D.K. Owen, R.G. Gardner, and J.D. Lewis. 2020. Combining rare alleles and grouped pollen donors to assign paternity in pollen dispersal studies. Applications in Plant Sciences 8(3):e11330. doi: 10.1002/aps3.11330
2019
57. Aloisio, J.M., M.I. Palmer, A.R. Tuininga and J.D. Lewis. 2019. Plant colonization of green roofs is affected by composition of established native plant communities. Frontiers in Ecology and Evolution 6:238. doi: 10.3389/fevo.2018.00238
56. Duan, H., J. Ontedhu, P. Milham, J.D. Lewis and D.T. Tissue. 2019. Effects of elevated carbon dioxide and elevated temperature on morphological, physiological and anatomical responses of Eucalyptusteretitcornis along a soil phosphorus gradient. Tree Physiology 39:1821-1837. doi: 10.1093/treephys/tpz094
2018
55. J. Aloisio, B. Johnson, J.D. Lewis, J.A. Clark, J. Munshi-South, D. Wasserman, J. Heimlich, S-J Roberts, K. Tingley. (accepted) Pre-college urban ecology research mentoring: promoting broader participation in ecology. Journal of Urban Ecology.
54. Duan H., B. Chaszar, J.D. Lewis, R. Smith, T. Huxman, and D.T. Tissue. 2018. CO2 and temperature effects on morphological and physiological traits affecting drought-induced mortality. Tree Physiology doi: 10.1093/treephys/tpy037
2017
53. A. Essene, K. Shek, J.D. Lewis, K. Peay, K. McGuire. 2017. Soil Type Has a Stronger Role than Dipterocarp Host Species in Shaping the Ectomycorrhizal Fungal Community in a Bornean Lowland Tropical Rain Forest. Frontiers in Plant Science 8(1828). doi.org/10.3389/fpls.2017.01828
52. H. Adams, M. Zeppel, W. Anderegg, H. Hartmann, S. Landhäusser, D. Tissue, T. Huxman, P. Hudson, T. Franz, C. Allen, L. Anderegg, G.A. Barron-Gafford, D. Beerling, D. Breshears, T. Brodribb, H. Bugmann, R. Cobb, A. Collins, L. Dickman, H. Duan, B. Ewers, L. Galiano, D. Galvez, N. Garcia-Forner, M. Gaylord, M. Germino, A. Gessler, U. Hacke, R Hakamada, A. Hector, M. Jenkins, J. Kane, T. Kolb, D. Law, J.D. Lewis, J.-M. Limousin, D. Love, A. Macalady, J. Martínez-Vilalta, M. Mencuccini, P. Mitchell, J. Muss, M. O’Brien, A. O’Grady, R. Pangle, E. Pinkard, F. Piper, J. Plaut, W. Pockman, J. Quirk, K. Reinhardt, F Ripullone, M Ryan, A. Sala, S. Sevanto, J. Sperry, R. Vargas, M. Vennetier, D. Way, C. Xu, E. Yepez, and N. McDowell. 2017. A multi-species synthesis of physiological mechanisms in drought-induced tree mortality. Nature: Ecology and Evolution 1:1285-1291. doi: 10.1038/s41559-017-0248-x
51. Aloisio, J.M., A.R. Tuininga, M. Palmer, M. Giampieri and J.D. Lewis. 2017. Spatially-dependent biotic and abiotic factors drive survivorship and physical structure of green roof vegetation. Ecological Applications 27:297-308. doi: 10.1002/eap.1444
50. Ansel, A., J.D. Lewis, D.J. Melnick, C. Martins, C. Valladares-Padua and B. Perez-Sweeney. 2017. Genetic variants related to disease susceptibly and immunotolerance in the Duffy Antigen Receptor for Chemokines (DARC, FY) gene in the black lion tamarin (Leontopithecus chrysopygus, Primates). American Journal of Primatology. doi: 10.1002/ajp.22690
2016
49. Aloisio, J.M., A.R. Tuininga and J.D. Lewis. 2016. Crop species selection effects on stormwater runoff and edible biomass in an agricultural green roof microcosm. Ecological Engineering 88:20-27. doi: 10.1016/j.ecoleng.2015.12.022
48. Bricklin, R.B., E. Thomas*, J. Weber, J.D. Lewis and J.A. Clark. 2016. Foraging birds during migratory stopovers in the New York Metropolitan area: associations with native and non-native plants. Urban Naturalist 11:1-16.
2015
47. Ganzhorn, S., B. Perez-Sweeney, W.W. Thomas, F.A. Gaiotto and J.D. Lewis. 2015. Effects of fragmentation on density and population genetics of a threatened tree species in a biodiversity hotspot. Endangered Species Research 26:189-199.
46. Ganzhorn, S., W.W. Thomas, F.A. Gaiotto and J.D. Lewis. 2015. Spatial genetic structure of Manilkara maxima (Sapotaceae), a threatened tree species from the Brazilian Atlantic forest. Journal of Tropical Ecology 31:437-447. doi: 10.1017/S0266467415000292
45. Lewis, J.D., N. Phillips, B. Logan, R. Smith, I. Aranjuelo, S. Clark, C.A. Offord, A. Frith, M. Barbour, T. Huxman and D.T. Tissue. 2015. Rising temperature negates the stimulatory effect of elevated CO2 on growth and physiology of Wollemi pine (Wollemia nobilis). Functional Plant Biology 42:836-850. doi: 10.1071/FP14256
44. Rubino, L.*, S. Charles*, A. Sirulnik, A.R. Tuininga and J.D. Lewis. 2015. Invasive insect effects on nitrogen cycling and host physiology are not tightly linked. Tree Physiology 35:124-133. doi: 10.1093/treephys/tpv004
2014
43. Cao, H., K. Butler*, M. Hussain* and J.D. Lewis. 2014. Variation in the fitness effects of mutations with population density and size in Escherichia coli. PLoS ONE 9:e105369.
42. Zeppel, M.J.B., J.D. Lewis, N.G. Phillips and D.T. Tissue. 2014. Consequences of nocturnal water loss: a synthesis of regulating factors and implications for capacitance, embolism and use in models. Tree Physiology 34:1047-1055.
41. Zeppel, M.J.B., J. Wilks and J.D. Lewis. 2014. Impacts of extreme precipitation and seasonal changes in precipitation on plants. Biogeosciences 11:3083-3093.
2013
40. Lewis, J.D., R.A. Smith*, O. Ghannoum, B.A. Logan, N.G. Phillips, and D.T. Tissue. 2013. Industrial-age changes in atmospheric [CO2] and temperature differentially alter responses of faster- and slower-growing Eucalyptus seedlings to short-term drought. Tree Physiology 33:475-488.
39. Logan, B.A., J.S. Reblin, D.M. Zonana*, R.F. Dunlavey*, C.R. Hricko*, A.W. Hall*, S.C.Schmiege*, R.A. Butschek*, K.L. Duran*, R.J.N. Emery*, L.V. Kurepin*, J.D. Lewis, R.P. Pharis, N.G. Phillips, and D.T. Tissue. 2013. Impact of eastern dwarf mistletoe (Arceuthobium pusillum) on host white spruce (Picea glauca) development, growth and performance across multiple scales. Physiologia Plantarum 147:502-513. doi: 10.111/j.1399-3054.2012.01681.x
38. Zeppel, M., B. Logan, J.D. Lewis, N. Phillips and D.T. Tissue. 2013. Why lose water at night? Disentangling the mystery of nocturnal sap flow, transpiration, and stomatal conductance -when, where, who? Acta Horticulturae 991:307-312.
2012
37. Smith, R.A.*, J.D. Lewis, O. Ghannoum and D.T. Tissue. 2012. Leaf structural responses to pre-industrial, current and elevated atmospheric [CO2] and temperature affect leaf function in Eucalyptus sideroxylon. Functional Plant Biology 39:285-296. doi: 10.1071/FP11238
36. Tissue, D.T. and J.D. Lewis. 2012. Learning from the past: how low [CO2] studies inform plant and ecosystem response to future climate change. New Phytologist 194:4-6.
35. Xu, C.Y., M.H. Turnbull, D.T. Tissue, J.D. Lewis, R. Carson, W.S.F. Schuster, D. Whitehead, A.D. Walcroft, J. Li and K.L Griffin. 2012. Age-related decline in stand growth is primarily due to mortality and not to changes in individual tree physiology, tree growth or stand structure in a Quercus-dominated forest. Journal of Ecology 100:428-440. doi: 10.1111/j.1365-2745.2011.01933.x
34. Zeppel, M.J.B., J.D. Lewis, B. Chaszar, R.A. Smith, B.E. Medlyn, T.E. Huxman and D.T. Tissue. 2012. Nocturnal stomatal conductance responses to rising [CO2], temperature and drought. New Phytologist 193:929-938. doi: 10.1111/j.1469-8137.2011.03993.x
2011
33. Lewis, J.D., N.G. Phillips, B.A. Logan, C. Hricko* and D.T. Tissue. 2011. Leaf photosynthesis, respiration and stomatal conductance in six Eucalyptus species native to mesic and xeric environments growing in a common garden. Tree Physiology 31:997-1006. doi: 10.1093/treephys/tpr087
32. Phillips, N.G., R. Attard*, O. Ghannoum, J.D. Lewis, B.A. Logan and D.T. Tissue. 2011. Impact of variable [CO2] and temperature on water transport structure-function relationships in Eucalyptus. Tree Physiology 31:945-952. doi: 10.1093/treephys/tpr047
31. Zeppel, M.J.B., J.D. Lewis, B. Medlyn, R. Duursma, M. Adams, D. Ellsworth, C. Barton, M. Forster, D. Eamus and D. Tissue. 2011. Interactive effects of elevated CO2 and drought on nocturnal water fluxes in Eucalyptus saligna. Tree Physiology 31:932-944. doi: 10.1093/treephys/tpr024
2010
30. Ghannoum, O., N.G. Phillips, J.P. Conroy, R.A. Smith*, R. Attard*, R. Woodfield, B.A. Logan, J.D. Lewis, and D.T. Tissue. 2010. Exposure to pre-industrial, current and future atmospheric [CO2] and temperature differentially affects growth and photosynthesis in Eucalyptus. Global Change Biology 16:303-319. doi: 10.1111/j.13652486.2009.02003.x
29. Ghannoum, O., N.G. Phillips, M.A. Sears*, B.A. Logan, J.D. Lewis, J.P. Conroy and D.T. Tissue. 2010. Photosynthetic responses of two eucalypts to industrial-age changes in atmospheric [CO2] and temperature. Plant, Cell and Environment 33:1671-1681. doi: 10.1111/j.1365-3040.2010.02172.x
28. Lewis, J.D., J.K. Ward and D.T. Tissue. 2010. Phosphorus supply drives nonlinear responses of cottonwood (Populus deltoides) to glacial through future [CO2]. New Phytologist 187:438-448. doi: 10.1111/j.1469-8137.2010.03307.x
27. Logan, B.A., C.R. Hricko*, J.D. Lewis, O. Ghannoum, N.G. Phillips, R. Smith*, J.P.Conroy and D.T. Tissue. 2010. Examination of pre-industrial and elevated [CO2] reveals the temperature-dependent CO2 sensitivity of light energy partitioning at photosystem II in Eucalypts. Functional Plant Biology 37:1041-1049. doi: 10.1071/FP10113
26. Phillips, N.G., J.D. Lewis, B.A. Logan and D.T. Tissue. 2010. Inter- and intra-specific variation in nocturnal water transport in Eucalyptus. Tree Physiology 30:586-596. doi: 10.1093/treephys/tpq009
25. Tissue, D.T. and J.D. Lewis. 2010. Photosynthetic responses of cottonwood seedlings grown in glacial through future atmospheric [CO2] vary with phosphorus supply. Tree Physiology 30:1361-1372. doi: 10.1093/treephys/tpq077
2009
24. Avolio, M.L., A.R. Tuininga, J.D. Lewis and M. Marchese*. 2009. Ectomycorrhizal responses to organic and inorganic nitrogen sources are context dependent. Mycological Research 113:897-907. doi: 10.1016/j.mycres.2009.05.001
23. Turner, G.D., J.D. Lewis, J.T. Mates-Muchin, W.F. Schuster and L. Watt*. 2009. Light availability differentially influences ectomycorrhizal fungal communities on oak seedlings grown in oak- and hemlock-associated soils. Canadian Journal of Forest Research 39:1247-1258. doi: 10.1139/X09-051
2008
22. Lewis, J.D., J. Licitra+, A.R. Tuininga, A. Sirulnik, G. Turner and J. Johnson. 2008. Oak seedling growth and ectomycorrhizal colonization are less in eastern hemlock stands infested with hemlock woolly adelgid than in adjacent oak stands. Tree Physiology 28:629-636. doi: 10.1093/treephys/28.4.629
21. Tingey, D.T., E.H. Lee, J.D. Lewis, M.G. Johnson and P.T. Rygiewicz. 2008. Do mesocosms influence photosynthesis and soil respiration? Environmental and Experimental Botany 62:36-44. doi: 10.1016/j.envexpbot.2007.07.003
2005
20. Nagel, J.M., X.Z. Wang, J.D. Lewis, H.A. Fung*, D.T. Tissue and K.L. Griffin. 2005. Atmospheric CO2 enrichment alters energy-use efficiency and patterns of energy investment and allocation in Xanthium strumarium. New Phytologist 166:513-523. doi: 10.1111/j.1469-8137.2005.01341.
2004
19. Lewis, J.D., M. Lucash, D.M. Olszyk and D.T. Tingey. 2004. Relationships between needle nitrogen concentration and photosynthetic responses of Douglas-fir seedlings to elevated carbon dioxide and temperature. New Phytologist 162:355-364. doi: 10.1111/j. 1469-8137.2004.01036.x
18. Shapiro, J.B., K.L. Griffin, J.D. Lewis and D.T. Tissue. 2004. Response of leaf respiration in the light of Xanthium strumarium to elevated CO2 concentration, nitrogen availability, and temperature. New Phytologist 162:377-386. doi: 10.1111/j.1469-8137.2004.01046.x
2003
17. Lewis, J.D., X.Z. Wang, K.L. Griffin and D.T. Tissue. 2003. Age at flowering differentially affects vegetative and reproductive responses of a determinate annual plant to elevated CO2. Oecologia 135:194-201.
2002
16. Lewis, J.D., M. Lucash, D.M. Olszyk and D.T. Tingey. 2002. Stomatal responses of Douglas-fir seedlings to elevated carbon dioxide and temperature during the third and fourth years of exposure. Plant, Cell and Environment 25:1411-1421.
15. Lewis, J.D., X.Z. Wang, K.L. Griffin and D.T. Tissue. 2002. Effects of age and ontogeny on photosynthetic responses of a determinate annual plant to elevated CO2 concentrations. Plant, Cell and Environment 25:359-368.
14. Tissue, D.T., J.D. Lewis, S.D. Wullschleger, J.S. Amthor, K.L. Griffin and O.R. Anderson. 2002. Leaf respiration at different canopy positions in sweetgum (Liquidambar styraciflua) grown in ambient and elevated concentrations of carbon dioxide in the field. Tree Physiology 22:1157-1166. doi: 10.1093/treephys/22.15-16.1157
2001
13. Griffin K.L., O.R. Anderson, M.D. Gastrich, J.D. Lewis, G. Lin, W. Schuster, J.R. Seemann, D.T. Tissue, M.H. Turnbull and D. Whitehead. 2001. Plant growth in elevated CO2 alters mitochondrial number and chloroplast fine structure. Proceedings of the National Academy of Sciences 98:2473-2478.
12. Lewis, J.D., M. Lucash, D. Olszyk and D.T. Tingey. 2001. Seasonal patterns of photosynthesis in Douglas-fir seedlings during the third and fourth year of exposure to elevated carbon dioxide and temperature. Plant, Cell and Environment 24:539-548
11. Wang X., J.D. Lewis, D.T. Tissue, J.R. Seemann and K.L Griffin. 2001. Effects of elevated atmospheric CO2 concentration on leaf dark respiration of Xanthium strumarium in light and in darkness. Proceedings of the National Academy of Sciences 98:2479-2484.
2000
10. Apple, M.E., D.M. Olszyk, D.P. Ormrod, J.D. Lewis, D. Southworth and D.T. Tingey. 2000. Morphology and stomatal function of Douglas-fir needles exposed to climate change: elevated CO2 and temperature. International Journal of Plant Sciences 161:127-132.
9. Lewis, J.D., R.B. McKane, D.T. Tingey and P.A. Beedlow. 2000. Vertical gradients in photosynthetic light response within an old-growth Douglas-fir and western hemlock canopy. Tree Physiology 20:447-456.
1999
8. Lewis, J.D., D. Olszyk and D.T. Tingey. 1999. Seasonal patterns of photosynthetic light response in Douglas-fir seedlings subjected to elevated atmospheric carbon dioxide and temperature. Tree Physiology 19:243-252.
1996
7. Lewis, J.D. and B.R. Strain. 1996. The role of mycorrhizas in the response of Pinus taeda L. seedlings to elevated CO2. New Phytologist 133:431-443.
6. Lewis, J.D., D.T. Tissue and B.R. Strain. 1996. Seasonal change in photosynthetic response of loblolly pine (Pinus taeda L.) exposed to elevated CO2 for two years. Global Change Biology 2:103-114.
1994
5. Lewis, J.D., K.L. Griffin, R.B. Thomas and B.R. Strain. 1994. Phosphorus supply affects the acclimation of photosynthesis in loblolly pine to elevated carbon dioxide. Tree Physiology 14:1229-1244.
4. Lewis, J.D., R.B. Thomas and B.R. Strain. 1994. Effect of elevated CO2 on mycorrhizal colonization of loblolly pine (Pinus taeda L.) seedlings. Plant and Soil 165:81-88.
3. Thomas R.B., J.D. Lewis and B.R. Strain. 1994. Effect of leaf nutrient status on photosynthetic capacity in loblolly pine (Pinus taeda L.) seedlings grown in elevated atmospheric CO2. Tree Physiology 14:947-960.
1990
2. Lewis, J.D. and R.T. Koide. 1990. Phosphorus supply, mycorrhizal infection and plant offspring vigour. Functional Ecology 4:695-702.
1988
1. Koide, R.T., M. Li, J.D. Lewis* and C. Irby. 1988. Role of mycorrhizal infection in the growth and reproduction of wild vs. cultivated plants. Oecologia.
Lewis Lab at Fordham 